Lincoln D. Stein > AcePerl > Ace::Graphics::Glyph::transcript

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NAME ^

Ace::Graphics::Glyph::transcript - The "gene" glyph

SYNOPSIS ^

  See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.

DESCRIPTION ^

This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.

The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns.

OPTIONS

In addition to the common options, the following glyph-specific option is recognized:

  Option                Description                    Default
  ------                -----------                    -------

  -implied_intron_color The color to use for gaps      gray
                        not returned by the introns()
                        method.

  -draw_arrow           Whether to draw arrowhead      true
                        indicating direction of
                        transcription.

BUGS ^

Please report them.

SEE ALSO ^

Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR ^

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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