The Perl Toolchain Summit needs more sponsors. If your company depends on Perl, please support this very important event.
 / 
Bio-BioStudio-2.11
River stage zero No dependents
++
/ Bio::BioStudio::Diff

NAME

Bio::BioStudio::Diff

VERSION

Version 2.10

DESCRIPTION

An object that allows the comparison of two Bio::BioStudio::Chromosome objects.

AUTHOR

Sarah Richardson <smrichardson@lbl.gov>.

CONSTRUCTOR METHOD

new

DESTROY

COMPARISON METHODS

compare_dbs

compare_features

compare_feature_sources

compare_feature_types

compare_feature_lengths

compare_feature_orientations

compare_feature_scores

compare_feature_phases

compare_feature_attributes

compare_feature_annotations

compare_feature_sequences

compare_feature_translations

compare_comments

verify_newseq

ACCESSOR METHODS

oldchr

newchr

checktrx

aligntrx

alignseq

checkseq

BLAST_factory

PRIVATE

_make_bl2seq_factory

Returns a Bio::Tools::Run::StandAloneBlastPlus object that can be used to run BLAST bl2seq queries

COPYRIGHT AND LICENSE

Copyright (c) 2015, BioStudio developers All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

* The names of Johns Hopkins, the Joint Genome Institute, the Joint BioEnergy Institute, the Lawrence Berkeley National Laboratory, the Department of Energy, and the BioStudio developers may not be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE DEVELOPERS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.