Robert Buels > Bio-Chado-Schema > Bio::Chado::Schema::Result::Sequence::FeatureCvterm

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Module Version: 0.20000   Source  

NAME ^

Bio::Chado::Schema::Result::Sequence::FeatureCvterm

DESCRIPTION ^

Associate a term from a cv with a feature, for example, GO annotation.

ACCESSORS ^

feature_cvterm_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'feature_cvterm_feature_cvterm_id_seq'

feature_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

cvterm_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

pub_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.

is_not

  data_type: 'boolean'
  default_value: false
  is_nullable: 0

If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.

rank

  data_type: 'integer'
  default_value: 0
  is_nullable: 0

RELATIONS ^

feature

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Sequence::Feature

pub

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Pub::Pub

cvterm

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

feature_cvterm_dbxrefs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref

feature_cvtermprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop

feature_cvterm_pubs

Type: has_many

Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub

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