bc_manage_members - Delete or rename community members
bc_manage_members -input_files communities.generic \ -exclude_names Cyanobacteria Eukaryot* \ -name_prefix "Root; " \ -output_prefix processed_communities
This script reads files containing biological communities and includes, deletes merges, sorts or renames the specified communities. See Bio::Community for more information.
Input file containing the communities to manipulate. When providing communities in a format that supports only one community per file (e.g. gaas), you can provide multiple input files.
Path and prefix for the output files. Default: output_prefix.default
Prefix to add to the beginning of all member names. Default: name_prefix.default
Suffix to add to the end of all member names. Default: name_suffix.default
If names of members are specified, only these members will be included in the output file. Member names can be specified using wildcards, which means that 'marine*2013' will match all names starting with 'marine' and finishing with '2013', while '*gut*' will match all names containing 'gut'.
Names of members to exclude from the output file. As with <include_names>, wildcards are supported.
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