bc_remove_unexpected_members - Remove community members not expected to occur, based on a reference community
remove_unexpected_members -if my_communities.generic \ -op my_modified_communities \ -cn theoretical
This script reads a community file that contains a reference community. For every other community in the file, every member that is not also present in the reference community is removed. This is useful if you have sequenced mock communities and some of them have spurious members.
This script reads a community file that contains reference communities. For every non-reference community in the file, every member that is not also present in the corresponding reference community is removed. This is useful if you have sequenced mock communities and some of them have spurious members.
Path and prefix for the output files. Default: output_prefix.default
Name of the reference community. Default: ref_name.default
Specify if <ref_name> represents a 'prefix', 'suffix', or the 'full' name of the reference community. Using prefix or suffix allows to have multiple communities with their respective reference community in the same input file. For example, using a suffic of '_theo', community 'sample1' is expected to have a reference community named 'sample1_theo'. Default: name_type.default
For the purpose of determining the name of the reference community, strip characters before or after the specified separator. For example, when using the prefix 'ref' and the separator '_', community 'sample1_rep1' and 'sample1_rep2' are expected to have a reference community named 'sample1_ref'.
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