Bio::DOOP::Util::Filt - Filter a cluster list
Version 0.3
use Bio::DOOP::DOOP; @list = ("81001020","81001110","81001200","80100006"); $db = Bio::DOOP::DBSQL->connect("username","passwd","doop-chordate-1_4","localhost"); $filt = Bio::DOOP::Util::Filt->new_by_list($db,\@list,500); @res = @{$filt->filt_by_goid("0046872")}; for(@res){ print $_->get_cluster_id,"\n"; }
This object filters a clusterlist. It is useful to find a smaller cluster set from a large mofext or fuzznuc search result.
Tibor Nagy, Godollo, Hungary and Endre Sebestyen, Martonvasar, Hungary
Creates a new filter object from a cluster object array.
Creates a new filter class from a cluster id array.
Creates a new filter class from a cluster primary id array.
Filter the cluster list by GO ids.
@filtered = @{$filt->filt_by_goid("0006523")};
To install Bio::DOOP::DOOP, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::DOOP::DOOP
CPAN shell
perl -MCPAN -e shell install Bio::DOOP::DOOP
For more information on module installation, please visit the detailed CPAN module installation guide.