Roger Pettett > Bio-Das-ProServer > Bio::Das::ProServer::SourceAdaptor::simple_interaction

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Module Version: 688   Source  

NAME ^

Bio::Das::ProServer::SourceAdaptor::simple_interaction

VERSION ^

$LastChangedRevision: 688 $

SYNOPSIS ^

  Interactions involving 001:
  <host>/das/<source>/interaction?interactor=001
  
  Interactions between 001 and 002
  <host>/das/<source>/interaction?interactor=001;interactor=002
  
  Interactions with some form of evidence:
  <host>/das/<source>/interaction?interactor=001;detail=property:evidence
  
  Interactions of a specific type:
  <host>/das/<source>/interaction?interactor=001;detail=property:type,value:foo

DESCRIPTION ^

  Serves up interaction DAS responses, using a file-based transport.

SUBROUTINES/METHODS ^

capabilities

build_interaction

DIAGNOSTICS ^

CONFIGURATION AND ENVIRONMENT ^

  [simple_interaction]
  adaptor               = simple_interaction
  state                 = on
  transport             = file
  filename              = /data/interactions.txt
  interactors.filename  = /data/interactors.txt
  coordinates           = MyCoordSys -> 001
  
  Tab-separated file formats:
  
  --interactors.txt--
  id    label   dbSource        dbSourceCvId    dbVersion       dbAccession     dbCoordSys      sequence        property        value   propertyCvId    valueCvId       start   end     startStatus     endStatus       startStatusCvId endStatusCvId
  
  --interactions.txt--
  interactor,interactor,..(sorted)      label   dbSource        dbSourceCvId    dbVersion       dbAccession     property        value   propertyCvId    valueCvId

DEPENDENCIES ^

Bio::Das::ProServer::SourceAdaptor

INCOMPATIBILITIES ^

None reported

BUGS AND LIMITATIONS ^

None reported

AUTHOR ^

  Andy Jenkinson <andy.jenkinson@ebi.ac.uk>

LICENSE AND COPYRIGHT ^

Copyright (c) 2007 EMBL-EBI

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