Bio::FASTASequence::File - Perl extension for Bio::FASTASequence
use Bio::FASTASequence::File;
my $filename = '/path/to/file.fasta';
my $parsed_fasta = Bio::FASTASequence::File->new($filename);
my $hashref = $parsed_fasta->get_result();
# or
my $parsed = Bio::FASTASequence::File->new();
my $hashref = $parsed->file($filename);
# if a sequence with accession_nr H23OP3 is in the file (as an example)
# these methods are the methods from Bio::FASTASequence
my $crc64 = $hashref->{H23OP3}->getCRC64();
my $sequence = $hashref->{H23OP3}->getSequence();
This module is an extension for Bio::FASTASequence to parse a fasta-file at once.
my $parsed_fasta = Bio::FASTASequence::File->new($filename);
creates a new instance of Bio::FASTASequence::File
my $parsed = Bio::FASTASequence::File->new(); $parsed->file($filename);
set the file for the object and parses the given file.
This module requires Bio::FASTASequence
Feel free to contact me for feature requests or bug reports:
Renee Baecker, <module@renee-baecker.de>
Copyright (C) 2004 by Renee Baecker
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.1 or, at your option, any later version of Perl 5 you may have available.
