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Bio-FastParsers-0.221230
River stage one • 7 direct dependents • 8 total dependents
1 ++

Changes for version 0.221230 - 2022-05-03

  • Fixes
    • Blast::Xml: fixed memory leak

Modules

Bio::FastParsers
Classes for parsing bioinformatic programs output
Bio::FastParsers::Base
Internal (base) class for all FastParsers
Bio::FastParsers::Blast
Classes for parsing BLAST output
Bio::FastParsers::Blast::Table
Front-end class for tabular BLAST parser
Bio::FastParsers::Blast::Table::Hsp
Internal class for tabular BLAST parser
Bio::FastParsers::Blast::Xml
Front-end class for XML BLAST parser
Bio::FastParsers::Blast::Xml::BlastOutput
NCBI BLAST DTD-derived internal class
Bio::FastParsers::Blast::Xml::Hit
NCBI BLAST DTD-derived internal class
Bio::FastParsers::Blast::Xml::Hsp
NCBI BLAST DTD-derived internal class
Bio::FastParsers::Blast::Xml::Iteration
NCBI BLAST DTD-derived internal class
Bio::FastParsers::Blast::Xml::Parameters
NCBI BLAST DTD-derived internal class
Bio::FastParsers::Blast::Xml::Statistics
NCBI BLAST DTD-derived internal class
Bio::FastParsers::CdHit
Front-end class for CD-HIT parser
Bio::FastParsers::Constants
Distribution-wide constants for Bio::FastParsers
Bio::FastParsers::Hmmer
Classes for parsing HMMER output
Bio::FastParsers::Hmmer::DomTable
Front-end class for tabular HMMER domain parser
Bio::FastParsers::Hmmer::DomTable::Hit
Internal class for tabular HMMER domain parser
Bio::FastParsers::Hmmer::Model
Internal class for HMMER parser
Bio::FastParsers::Hmmer::Standard
Front-end class for standard HMMER parser
Bio::FastParsers::Hmmer::Standard::Domain
Internal class for standard HMMER parser
Bio::FastParsers::Hmmer::Standard::Iteration
Front-end class for standard HMMER parser
Bio::FastParsers::Hmmer::Standard::Target
Internal class for standard HMMER parser
Bio::FastParsers::Hmmer::Table
Front-end class for tabular HMMER parser
Bio::FastParsers::Hmmer::Table::Hit
Internal class for tabular HMMER parser
Bio::FastParsers::Roles::Clusterable
Attributes and methods common to CD-HIT and UCLUST drivers
Bio::FastParsers::Roles::Domainable
Domain attrs common to HMMER Standard::Domain and DomTable::Hit
Bio::FastParsers::Roles::Targetable
Target attrs common to HMMER Standard::Target and Table::Hit
Bio::FastParsers::Types
Distribution-wide Moose types for Bio::FastParsers
Bio::FastParsers::Uclust
Front-end class for UCLUST parser

Other files