Joachim Bargsten > Bio-Gonzales > MANIFEST

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# This file was automatically generated by Dist::Zilla::Plugin::Manifest v6.010.
Build.PL
Changes
LICENSE
MANIFEST
META.yml
README
bin/agp2fasta.pl
bin/aln2aln.pl  [pod]
bin/bg-seq-parallel
bin/bg_fachar
bin/bg_faclean.pl
bin/bg_faextract
bin/bg_fagrep  [pod]
bin/bg_fahead.pl
bin/bg_fasplit.pl  [pod]
bin/bg_fastat.pl  [pod]
bin/bg_fasub
bin/bg_hist.pl
bin/bg_revcom.pl
bin/bg_xlsx2tsv.pl  [pod]
bin/blast2gff3.pl
bin/consense_tree.pl
bin/coords2gff.pl  [pod]
bin/fa2sto.pl
bin/facompare
bin/fadiff  [pod]
bin/faeq-seq  [pod]
bin/faextract_by_treeleaves
bin/faformat
bin/faln2phylip.pl
bin/fapair-identity
bin/farmgaps
bin/favalidate
bin/gff_to_bed.pl
bin/gffcds2seq.pl  [pod]
bin/gitv_tex
bin/gonz_compcol.pl
bin/gonz_gorel2dict.pl
bin/gonz_gosyn2dict.pl
bin/gonz_overlap.pl
bin/gonz_unmap.pl  [pod]
bin/gonzc
bin/gonzconf
bin/gonzlog
bin/gonzp
bin/headeridx.pl
bin/instantblast.pl
bin/iof.pl
bin/m2x  [pod]
bin/merge_fa-qual.pl
bin/newick2phyloxml.pl
bin/ppt_profile_cmd.pl  [pod]
bin/ppt_profile_cmd_plot.R
bin/ppt_watch_process.pl  [pod]
bin/self_dot_plot.pl
bin/show-align2clustalw.pl  [pod]
bin/uniq_nodes.pl
biopkg.txt
dist.ini
lib/Bio/Gonzales.pm  [pod]
lib/Bio/Gonzales/Align.pm
lib/Bio/Gonzales/Align/ConsensePrimer.pm
lib/Bio/Gonzales/Align/ConsensePrimer1.pm
lib/Bio/Gonzales/Align/IO.pm  [pod]
lib/Bio/Gonzales/Align/IO/MAF.pm
lib/Bio/Gonzales/Align/IO/Stockholm.pm  [pod]
lib/Bio/Gonzales/Align/Jalview.pm
lib/Bio/Gonzales/Assembly/IO.pm  [pod]
lib/Bio/Gonzales/Domain/Group.pm
lib/Bio/Gonzales/Domain/Identification/HMMER.pm  [pod]
lib/Bio/Gonzales/Domain/Identification/HMMER/SeqMarks.pm
lib/Bio/Gonzales/Feat.pm  [pod]
lib/Bio/Gonzales/Feat/IO.pm
lib/Bio/Gonzales/Feat/IO/BED.pm
lib/Bio/Gonzales/Feat/IO/Base.pm
lib/Bio/Gonzales/Feat/IO/CDhit.pm
lib/Bio/Gonzales/Feat/IO/GFF3.pm  [pod]
lib/Bio/Gonzales/Feat/IO/MUM.pm
lib/Bio/Gonzales/Feat/IO/SWISS.pm
lib/Bio/Gonzales/GO/Util.pm
lib/Bio/Gonzales/Graphics/BLAST.pm  [pod]
lib/Bio/Gonzales/Graphics/Glyph/colorfulBox.pm
lib/Bio/Gonzales/IDMapIO.pm  [pod]
lib/Bio/Gonzales/Matrix/IO.pm  [pod]
lib/Bio/Gonzales/Matrix/IO/csv.pm
lib/Bio/Gonzales/Matrix/IO/mcl.pm
lib/Bio/Gonzales/Matrix/Util.pm
lib/Bio/Gonzales/MiniFeat.pm
lib/Bio/Gonzales/Phylo/Dendroscope.pm  [pod]
lib/Bio/Gonzales/Phylo/IO.pm
lib/Bio/Gonzales/Phylo/Util.pm  [pod]
lib/Bio/Gonzales/PrimarySeqIX.pm  [pod]
lib/Bio/Gonzales/Project.pm
lib/Bio/Gonzales/Project/Functions.pm  [pod]
lib/Bio/Gonzales/Project/Introduction.pod  [pod]
lib/Bio/Gonzales/Range/Cluster.pm  [pod]
lib/Bio/Gonzales/Range/GroupedOverlap.pm  [pod]
lib/Bio/Gonzales/Range/Overlap.pm  [pod]
lib/Bio/Gonzales/Range/Util.pm
lib/Bio/Gonzales/Role/BioPerl/Constructor.pm
lib/Bio/Gonzales/Search/IO/BLAST.pm  [pod]
lib/Bio/Gonzales/Search/IO/HMMER3.pm
lib/Bio/Gonzales/Seq.pm  [pod]
lib/Bio/Gonzales/Seq/Filter.pm  [pod]
lib/Bio/Gonzales/Seq/Filter/DuplicateSeqs.pm  [pod]
lib/Bio/Gonzales/Seq/Filter/ProteinCleaner.pm  [pod]
lib/Bio/Gonzales/Seq/IO.pm  [pod]
lib/Bio/Gonzales/Seq/IO/Fasta.pm
lib/Bio/Gonzales/Seq/IO/fastq.pm
lib/Bio/Gonzales/Seq/LongestTranscript.pm
lib/Bio/Gonzales/Seq/Util.pm  [pod]
lib/Bio/Gonzales/Seq/Validate/fasta.pm
lib/Bio/Gonzales/Stat/Util.pm
lib/Bio/Gonzales/String/Util.pm
lib/Bio/Gonzales/SummarizedExperiment.pm  [pod]
lib/Bio/Gonzales/Tools/SeqMask.pm  [pod]
lib/Bio/Gonzales/Tools/SeqStats.pm
lib/Bio/Gonzales/Util.pm  [pod]
lib/Bio/Gonzales/Util/Cerial.pm  [pod]
lib/Bio/Gonzales/Util/Development.pm  [pod]
lib/Bio/Gonzales/Util/Development/File.pm  [pod]
lib/Bio/Gonzales/Util/Development/Module.pm  [pod]
lib/Bio/Gonzales/Util/File.pm  [pod]
lib/Bio/Gonzales/Util/Graphics/Color/Generator.pm  [pod]
lib/Bio/Gonzales/Util/IO/Compressed.pm
lib/Bio/Gonzales/Util/Log.pm  [pod]
lib/Bio/Gonzales/Util/Math.pm  [pod]
lib/Bio/Gonzales/Util/Math/kNN/via/Distances.pm  [pod]
lib/Bio/Gonzales/Util/Role/FileIO.pm  [pod]
lib/Bio/Gonzales/Util/Text.pm  [pod]
lib/Bio/Gonzales/Var/IO/VCF.pm  [pod]
lib/Bio/Gonzales/Var/Util.pm
t/00-load.t
t/Bio-Gonzales-Align-IO.t
t/Bio-Gonzales-Align-Jalview.t
t/Bio-Gonzales-Domain-Group.t
t/Bio-Gonzales-Feat-IO-BED.t
t/Bio-Gonzales-Feat-IO-GFF3.t
t/Bio-Gonzales-Feat-IO-SWISS.t
t/Bio-Gonzales-Feat.t
t/Bio-Gonzales-Matrix-IO-mcl.t
t/Bio-Gonzales-Matrix-IO.t
t/Bio-Gonzales-Matrix-Util.t
t/Bio-Gonzales-Project-Functions.t
t/Bio-Gonzales-Project.t
t/Bio-Gonzales-Range-Cluster.t
t/Bio-Gonzales-Range-Overlap.t
t/Bio-Gonzales-Range-Util.t
t/Bio-Gonzales-Role-BioPerl-Constructor.t
t/Bio-Gonzales-Search-IO-HMMER3.t
t/Bio-Gonzales-Search-IO-HMMER3_no-hits.result
t/Bio-Gonzales-Seq-Filter-pep_clean.fa
t/Bio-Gonzales-Seq-Filter-pep_dirty.fa
t/Bio-Gonzales-Seq-Filter.t
t/Bio-Gonzales-Seq-IO-fastq.solexa.ref.cache.yml
t/Bio-Gonzales-Seq-IO-fastq.t
t/Bio-Gonzales-Seq-Util.t
t/Bio-Gonzales-Seq-Validate-fasta.t
t/Bio-Gonzales-Seq.t
t/Bio-Gonzales-SummarizedExperiment.t
t/Bio-Gonzales-Tools-SeqMask.t
t/Bio-Gonzales-Util-Cerial.t
t/Bio-Gonzales-Util-File.t
t/Bio-Gonzales-Util-Log.t
t/Bio-Gonzales-Util-Log_threads.t
t/Bio-Gonzales-Util-Math.t
t/Bio-Gonzales-Util-Text.t
t/Bio-Gonzales-Util.t
t/Bio-Gonzales-Var-Util.t
t/IDMapIO.t
t/Math-kNN-via-Distances.t
t/Matrix-IO-mcl.distances
t/Matrix-IO-mcl_phylip.distances
t/accession.hmmresult
t/bin_show-align2clustalw.pl
t/boilerplate.t
t/data/HMMSearch_Speruvianum.gff
t/data/HMMSearch_Speruvianum.result
t/data/example.pep.fa
t/data/map.tsv
t/data/mini.fasta
t/data/rprot-domains_ebakker.fasta
t/data/starch_search_ioannis.hmmer3.reference_result.yml
t/data/starch_search_ioannis.hmmer3.result
t/data/test.aln.fa
t/data/test.aln.fa.no-relaxed.ref.phylip
t/data/test.aln.fa.relaxed.ref.phylip
t/data/test.aln.interleaved.phylip
t/data/test.aln.interleaved.ref.phylip
t/data/test.show-aligns.nt.aln
t/data/test.tsv
t/data/uniprot_sprot.dat
t/data/uniprot_trembl.dat
t/gonz_unmap.t
t/idlist.txt
t/idlist.txt.bg.gz
t/idlist.txt.bz2
t/idlist.txt.gz
t/idlist.txt.xz
t/manifest.t
t/process_dummy.pl
t/seqio-fasta-idmap.fa
t/test.aln.phylip
t/test.bed
t/test.gff3
t/test.hmm
t/test.map