Lincoln D. Stein > Bio-Graphics > Bio::Graphics::Glyph::decorated_gene

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NAME ^

Bio::Graphics::Glyph::decorated_gene - A GFF3-compatible gene glyph with protein decorations

SYNOPSIS ^

  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION ^

This glyph has the same functionality as the Bio::Graphics::Glyph::gene glyph, but uses the Bio::Graphics::Glyph::decorated_transcript glyph instead of the Bio::Graphics::Glyph::processed_transcript glyph to draw transcripts.

One usecase for the 'decorated_gene' glyph is to highlight protein features of different splice forms of the same gene to see how splice forms differ in terms of protein features, for example the presence of predicted signal peptides or protein domains.

See Bio::Graphics::Glyph::decorated_transcript for a description of how to provide protein decorations for transcripts.

BUGS ^

SEE ALSO ^

Bio::Graphics::Glyph::gene, Bio::Graphics::Glyph::decorated_transcript

AUTHOR ^

Christian Frech <cfa24@sfu.ca>

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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