LIMAONE > Bio-Grep > Bio::Grep::Filter::FilterRemoveDuplicates

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Module Version: v0.10.6   Source  

NAME ^

Bio::Grep::Filter::FilterRemoveDuplicates - Example Filter

SYNOPSIS ^

 my $rd_filter =  Bio::Grep::Filter::FilterRemoveDuplicates->new(); 

 $sbe->search({
    query   => $query,
    filters => [ $rd_filter ],
 });

DESCRIPTION ^

Bio::Grep::Filter::FilterRemoveDuplicates is an example filter that allows only unique sequence ids in search results. It is useful if you are only interested in which genes the query was found. Deletes the result if the id already occurred. Ignores suffixes of the form ".xx", where xx are digit characters (this normally represents alternative splice forms).

METHODS ^

See Bio::Grep::Filter::FilterI for inherited methods.

CONSTRUCTOR

Bio::Grep::Filter::FilterRemoveDuplicates->new()

This function constructs a FilterRemoveDuplicates object.

SEE ALSO ^

Bio::Grep::Filter::FilterI Bio::Grep::Backend::BackendI

AUTHOR ^

Markus Riester, <mriester@gmx.de>

LICENSE AND COPYRIGHT ^

Copyright (C) 2007-2009 by M. Riester.

Based on Weigel::Search v0.13, Copyright (C) 2005-2006 by Max Planck Institute for Developmental Biology, Tuebingen.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER OF WARRANTY ^

BECAUSE THIS SOFTWARE IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE SOFTWARE, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE SOFTWARE IS WITH YOU. SHOULD THE SOFTWARE PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR, OR CORRECTION.

IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE SOFTWARE AS PERMITTED BY THE ABOVE LICENSE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE SOFTWARE (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE SOFTWARE TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.

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