Bio::IlluminaSAV - Parse Illumina SAV files
Routines for parsing and extracting information from Illumina SAV files (aka "InterOp").
use IlluminaSAV; my $savs = IlluminaSAV->new("/path/to/rundirectory"); my @qmetrics = $savs->quality_metrics(); my $cur_cycle = $savs->cur_cycle(); my $num_reads = $savs->num_reads();
Easy access to Illumina's SAV file data.
Andrew Hoerter & Erik Aronesty, <earonesty@cpan.org>
Copyright (C) 2013 Erik Aronesty / Expression Analysis
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.1 or, at your option, any later version of Perl 5 you may have available.
# constants you can use TILE_METRIC_CLUST_DENS TILE_METRIC_PF_CLUST_DENS TILE_METRIC_NUM_CLUSTERS TILE_METRIC_NUM_PF_CLUSTERS TILE_METRIC_CONTROL_LANE
1 POD Error
The following errors were encountered while parsing the POD:
=over without closing =back
To install Bio::IlluminaSAV, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::IlluminaSAV
CPAN shell
perl -MCPAN -e shell install Bio::IlluminaSAV
For more information on module installation, please visit the detailed CPAN module installation guide.