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all_entities_Model

Return all instances of the Model entity.

A model specifies a relationship between sets of features and reactions in a cell. It is used to simulate cell growth and gene knockouts to validate annotations.

Example:

    all_entities_Model -a 

would retrieve all entities of type Model and include all fields in the entities in the output.

The Model entity has the following relationship links:

IsARequirementIn Requirement
IsDividedInto ModelCompartment
Manages Biomass
Models Genome

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

mod_date
name
version
type
status
reaction_count
compound_count
annotation_count

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.