The Perl Toolchain Summit needs more sponsors. If your company depends on Perl, please support this very important event.

query_entity_Subsystem

Query the entity Subsystem.

A subsystem is a set of functional roles that have been annotated simultaneously (e.g., the roles present in a specific pathway), with an associated subsystem spreadsheet which encodes the fids in each genome that implement the functional roles in the subsystem.

Example:

    query_entity_Subsystem -a 

The Subsystem entity has the following relationship links:

Describes Variant
Includes Role
IsInClass SubsystemClass
IsRelevantTo Diagram
IsSubInstanceOf Scenario
WasProvidedBy Source

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

version
curator
notes
description
usable
private
cluster_based
experimental

Output Format

The standard output is a tab-delimited file containing a column for each requested field.