Tim Rayner > Bio-MAGETAB > Bio::MAGETAB::DatabaseEntry

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NAME ^

Bio::MAGETAB::DatabaseEntry - MAGE-TAB database entry class

SYNOPSIS ^

 use Bio::MAGETAB::DatabaseEntry;

DESCRIPTION ^

This class is used to store MAGE-TAB database entry information. These entries can be from sequence databases (e.g. as attached to Reporters), ontologies (when using the ControlledTerm subclass), or databases which hold higher-level metadata (e.g. ArrayDesigns, Protocols). See the BaseClass class for superclass methods.

ATTRIBUTES ^

accession (optional)

The accession number for the database entry (data type: String).

termSource (optional)

The TermSource (e.g., database or ontology) which defines the entry, and which recognises the given accession (data type: Bio::MAGETAB::TermSource).

METHODS ^

Each attribute has accessor (get_*) and mutator (set_*) methods, and also predicate (has_*) and clearer (clear_*) methods where the attribute is optional. Where an attribute represents a one-to-many relationship the mutator accepts an arrayref and the accessor returns an array.

SEE ALSO ^

Bio::MAGETAB::BaseClass

AUTHOR ^

Tim F. Rayner <tfrayner@gmail.com>

LICENSE ^

This library is released under version 2 of the GNU General Public License (GPL).

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