Arlin Stoltzfus > Bio-NEXUS > align2nex.pl

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NAME ^

align2nex.pl - translate an alignment into NEXUS format using BioPerl

SYNOPSIS ^

align2nex.pl [options] <infile>

DESCRIPTION ^

Output the alignment in <infile> in NEXUS format. This is dependent on BioPerl AlignIO modules. I don't know how well it will work.

OPTIONS ^

-f, --format

The format of the input file. One of { bl2seq, clustalw, emboss, fasta, mase, mega, meme, msf, nexus, pfam, phylip, prodom, psi, selex, stockholm }.

-o, --outfile

The name of the output file. Defaults to out.nex.

-h, --help

Print a brief help message and exits.

--man

Print the manual page and exits.

-V, --version

Print the version information and exit.

VERSION ^

$Id: align2nex.pl,v 1.6 2006/08/24 06:41:57 thladish Exp $

AUTHOR ^

Arlin Stoltzfus (stoltzfu@umbi.umd.edu)

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