Arlin Stoltzfus > Bio-NEXUS > nex2text_tree.pl

Download:
Bio-NEXUS-0.78.tar.gz

Annotate this POD

CPAN RT

New  1
Open  2
View/Report Bugs
Source  

NAME ^

nex2text_tree.pl - Trees as strings

SYNOPSIS ^

 nex2text_tree.pl [options] [file ...]
 nex2text_tree.pl --tree_width 100 --otu_spacing 4 --demo
 nex2text_tree.pl -i input.nex -o text_string_tree.out --tree_width 100 --otu_spacing 4

OPTIONS ^

    -d or --demo                    Prints out a default tree to the STDOUT
    -h or --help                    Brief help message about the options
    -m or --manual                  Full documentation
    -i or --input <file_name>       Specify input NEXUS file 
    -o or --output <file_name>      Specify output file (default: STDOUT)
    -w or --tree_width 30           Total width of the output tree string (default = 30) [Integer]
    -s or --otu_spacing 4           Vertical spacing betweein OTUs (default value = 4) [Integer]
    -V or --version                 Print version information and quit
    --verbose                       The parameters are also printed along with the tree.
    -c or --cladogram  normal       The parameters are also printed along with the tree. (options: 'normal' or 'accelarated')

DESCRIPTION ^

   B<nex2text_tree.pl> prgram will read the given input NEXUS file and converts the newick tree in the TreesBlock 
   as string.

AUTHOR(S) ^

          Vivek Gopalan (gopalan_vivek@yahoo.com)          

METHODS ^

syntax highlighting: