tree2nex.pl - translate a tree in DND or phylip format into NEXUS TREES block
tree2nex.pl [options] <infile>
Output the tree in <infile> in NEXUS format. This is currently implemented outside the NEXUS package. It should be re-implemented with NEXUS objects and with the capacity to output a TAXA block using the OTU list from TreesBlock->get_OTUlist. But some changes need to be made to the NEXUS package first.
The format of the input file. Not implemented.
The name to be assigned to this tree in a NEXUS TREES block.
Print a brief help message and exits.
Print the manual page and exits.
Print the version information and exit.
$Id: tree2nex.pl,v 1.4 2010/09/22 19:59:57 astoltzfus Exp $
Arlin Stoltzfus (stoltzfu@umbi.umd.edu)
To install Bio::NEXUS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::NEXUS
CPAN shell
perl -MCPAN -e shell install Bio::NEXUS
For more information on module installation, please visit the detailed CPAN module installation guide.