Rutger Vos > Bio-Phylo > Bio::Phylo::Parsers::Ubiosearch

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NAME ^

Bio::Phylo::Parsers::Ubiosearch - Parser used by Bio::Phylo::IO, no serviceable parts inside

DESCRIPTION ^

This module parses the XML that is returned by a uBio namebank search. An example of such a record is here: http://www.ubio.org/webservices/examples/namebank_search.xml

The parser creates a single Bio::Phylo::Taxa object to which the metadata on the search (time, date stamp, uBio version number) are attached. This taxa object is then populated with Bio::Phylo::Taxa::Taxon objects that are annotated with the metadata for each search result.

SEE ALSO ^

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Bio::Phylo::IO

The uBio search result parser is called by the Bio::Phylo::IO object. Look there to learn more about parsing.

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com

CITATION ^

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

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