Reece Hart > Bio-Prospect > Bio::Prospect::SoapClient

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Bio-Prospect-1.04.tar.gz

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Module Version: 1.12   Source  

NAME ^

 Bio::Prospect::SoapClient -- execute Prospect remotely
 $Id: SoapClient.pm,v 1.12 2003/11/18 19:45:45 rkh Exp $

SYNOPSIS ^

 my $in = new Bio::SeqIO( -format=> 'Fasta', '-file' => $ARGV[0] );
 my $po = new Bio::Prospect::Options( seq=>1, svm=>1, global_local=>1,
   templates=>['1alu', '1bgc','1eera']);
 my $pf = new Bio::Prospect::SoapClient( {options=>$po,host=>'sanitas'} );

 while ( my $s = $in->next_seq() ) {
   my @threads = $pf->thread( $s );
 }

DESCRIPTION ^

Bio::Prospect::SoapClient is runs Prospect remotely using SOAP as the protocol. Communicate to a Bio::Prospect::SoapServer process running on a remote machine.

ROUTINES & METHODS ^

new()

 Name:      new()
 Purpose:   constructor
 Arguments: hash reference with following key/value pairs
   options => Bio::Prospect::Options object (required)
   host    => hostname of SOAP server (optional)
   port    => port of SOAP server (optional)
 Returns:   Bio::Prospect::SoapClient

thread()

 Name:      thread()
 Purpose:   return a list of Thread objects
 Arguments: Bio::Seq object
 Returns:   list of Bio::Prospect::Thread objects

thread_summary()

 Name:      thread_summary()
 Purpose:   return a list of ThreadSummary objects
 Arguments: Bio::Seq object
 Returns:   list of rospect2::ThreadSummary objects

xml()

 Name:      xml()
 Purpose:   return xml string 
 Arguments: Bio::Seq object
 Returns:   string

INTERNAL METHODS & ROUTINES ^

The following functions are documented for developers' benefit. THESE SHOULD NOT BE CALLED OUTSIDE OF THIS MODULE. YOU'VE BEEN WARNED.

_parseOprions()

 Name:      _parseOprions()
 Purpose:   parse Bio::Prospect::Oprions into an array for the SOAP server
 Arguments: Bio::Seq object
 Returns:   string

SEE ALSO ^

Bio::Prospect::Options, Bio::Prospect::File, Bio::Prospect::Client, Bio::Prospect::LocalClient, Bio::Prospect::Thread, Bio::Prospect::ThreadSummary

http://www.bioinformaticssolutions.com/

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