Ken Youens-Clark > Bio-SSRTool > ssrtool

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NAME ^

ssrtool - Find SSRs

SYNOPSIS ^

  ssrtool [options] file1 [file2 ...]

Options:

  -r|--min-repeats  A postive integer defining the minimum number of repeats
  -l|--motif-length A postive integer defining the length of the repeat
  -o|--out-file     A file to write the output (default is STDOUT)
  --help            Show brief help and exit
  --man             Show full documentation

DESCRIPTION ^

Finds the simple sequence repeats (SSRs) in the files containing sequence data in FASTA format.

SEE ALSO ^

Bio::SSRTool.

AUTHOR ^

Ken Youens-Clark <kclark@cshl.edu>.

COPYRIGHT ^

Copyright (c) 2012 Cold Spring Harbor Laboratory

This module is free software; you can redistribute it and/or modify it under the terms of the GPL (either version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text and to DISCLAIMER for additional warranty disclaimers.

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