Documentation
check if tr tag is present
Perform full tradis analysis
check if tr tag is present
filter tags at start of fastq sequences
remove user specified tags from start of fastq sequences
Generate plots as part of a tradis analysis
Modules
Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
Add tags to the start of the sequences
Add given tags to the start of the sequence
Check for presence of tr tag in BAM file
Remove given tags from the start of the sequence
Generate plots as part of a tradis analysis
Remove given tags from the start of the sequence
Perform mapping
Perform full tradis analysis
Adds tags to sequences if tags are present
Detect tr tags in BAM file
Filter tags in a fastq file
Perform mapping
Very basic BAM parser. Limited functionality.
Basic FastQ parser.
Remove tags from seqs a fastq file
Perform all steps required for a tradis analysis
Generate plots as part of a tradis analysis