Bio::VertRes::Config::Pipelines::StampyMapping - Base class for the Stampy mapper
version 1.133090
Base class for the Stampy mapper use Bio::VertRes::Config::Pipelines::StampyMapping;
my $pipeline = Bio::VertRes::Config::Pipelines::StampyMapping->new( database => 'abc', reference => 'Staphylococcus_aureus_subsp_aureus_ABC_v1', limits => { project => ['ABC study'], species => ['EFG'] }, ); $pipeline->to_hash();
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::VertRes::Config, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::VertRes::Config
CPAN shell
perl -MCPAN -e shell install Bio::VertRes::Config
For more information on module installation, please visit the detailed CPAN module installation guide.