View on
MetaCPAN
Michael T. Wolfinger > Bio-ViennaNGS > Bio::ViennaNGS::ExtFeature

Download:
Bio-ViennaNGS-v0.17.1.tar.gz

Dependencies

Annotate this POD

View/Report Bugs
Source  

NAME ^

Bio::ViennaNGS::ExtFeature - A Moose wrapper for extended BED6-type genomic intervals.

SYNOPSIS ^

  use Bio::ViennaNGS::ExtFeature;

  my $expression = Bio::ViennaNGS::Feature->new(chromosome => "chr1",
                                                start => "1200",
                                                end => "4300",
                                                strand => "+",
                                                name => "foobar",
                                                score => "100",
                                                extension => "34:x:36 100:200",
                                               );

DESCRIPTION ^

This module provides an object-oriented interface for storing extended genomic intervals characterized via chromosome, start position, end position, name, score, strand as well as an arbitrary string. As such, it can be regarded a simple wrapper for extended BED6 elements.

This class inherits from Bio::ViennaNGS::Feature.

SEE ALSO ^

Bio::ViennaNGS
Bio::ViennaNGS::Feature

AUTHORS ^

Michael T. Wolfinger <michael@wolfinger.eu>

COPYRIGHT AND LICENSE ^

Copyright (C) 2014-2017 Michael T. Wolfinger <michael@wolfinger.eu>

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.0 or, at your option, any later version of Perl 5 you may have available.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

syntax highlighting: