bed2bedGraph.pl - Convert BED or extended BED files to bedGraph format
bed2bedGraph.pl [-f FILE] [-c FILE] [-t STRING] [-a STRING] [options]
This program converts BED files to strand specific bedGraph files, allowing additional annotation and automatic generation of bedGraph files which can easily be converted to big-type files for UCSC visualization.
BED file for conversion.
File containing chromosome sizes
Type of bed file (e.g. sample name, replicate name, condition, ...)
Whether file is a standard bed or extended bed, 'extended' for extended bed
Print short help
Prints the manual page and exits
Joerg Fallmann <email@example.com>