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Michael T. Wolfinger > Bio-ViennaNGS > kmer_analysis.pl

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NAME ^

kmer_analysis.pl - Simple k-mer count analysis of fasta or fastq files

SYNOPSIS ^

kmer_analysis.pl [-f FILE] [-d STRING] [-o STRING] [-k INTEGER] [-t STRING] [options]

DESCRIPTION ^

This program counts k-mers of user defined length in fasta or fastq files.

OPTIONS ^

-f

File for processing

-d

Working directory

-o

Output directory

-k

Kmer length to search

-t

File type, can either be fasta or fastq

--help -h

Print short help

--man

Prints the manual page and exits

AUTHOR ^

Joerg Fallmann <joerg.fallmann@univie.ac.at>

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