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Tristan Colombo >
BioGraph >
BioGraph::Clustering

Module Version: 1.0.0
BioGraph::Clustering

use BioGraph::Clustering;

Package for manipulate graphs represented as well as adjacent matrix or adjacent list. Library for clustering graphs.

This is the list of the differents functions implemented in this library.

**ZD_kernel**-
Compute the kernels of the graph

- SYNOPSIS %K=ZD_kernel(representation, ref_density, graph)
- PARAMETERS
*representation*-
the type of representation choosen : 1 = adjacent matrix, and 2 = adjacent list

*ref_density*-
reference to the table of densities

*graph*-
the hash table of the graph

- OUTPUT The kernels (view as clusters) of the graph computed according to the definition of T. Colombo, A. Guenoche and Y. Quentin, "Research of density areas in a graph - Application to orthologous genes", Proceedings of the Fourth International Conference on Knowledge Discovery and Discrete Mathematics (2003).

**ZD_extension**-
Compute the clusters of the graph

- SYNOPSIS %C=ZD_extension(representation, ref_density, ref_kernel, graph)
- PARAMETERS
*representation*-
the type of representation choosen : 1 = adjacent matrix, and 2 = adjacent list

*ref_density*-
reference to the table of densities

*ref_kernel*-
reference to the hash table of kernels

*graph*-
the hash table of the graph

- OUTPUT The clusters of the graph computed according to the definition of T. Colombo, A. Guenoche and Y. Quentin, "Research of density areas in a graph - Application to orthologous genes", Proceedings of the Fourth International Conference on Knowledge Discovery and Discrete Mathematics (2003).

BioGraph::FileAccess is Copyright (C) 2004, Tristan Colombo CNRS - LCB, 31 chemin Joseph Aiguier 13009 Marseille France Email: tristan.colombo@ibsm.cnrs-mrs.fr All rights reserved. You may distribute this package under the terms of the GNU General Public License.

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