Christopher Fields > BioPerl > Bio::DB::SeqFeature::NormalizedFeatureI

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Module Version: 1.006924   Source  

NAME ^

Bio::DB::SeqFeature::NormalizedFeatureI -- Interface for normalized features

SYNOPSIS ^

none

DESCRIPTION ^

This is an extremely simple interface that contains a single method, subfeatures_are_normalized(). This method returns a true value.

Bio::DB::SeqFeature::Store feature classes will inherit this interface to flag that they are able to store subfeatures in a normalized way such that the subfeature is actually contained in the Bio::DB::SeqFeature::Store database and the parent feature contains only the subfeatures primary ID.

BUGS ^

None, but the whole class design might be flawed.

SEE ALSO ^

bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store, Bio::DB::SeqFeature::Segment, Bio::DB::SeqFeature::GFF3Loader, Bio::DB::SeqFeature::Store::DBI::mysql, Bio::DB::SeqFeature::Store::bdb

AUTHOR ^

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2006 Cold Spring Harbor Laboratory.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

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