Bio::Factory::AnalysisI - An interface to analysis tool factory
This is an interface module - you do not instantiate it. Use Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory; my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;
This interface contains all public methods for showing available analyses and for creating objects representing them.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
email@example.com - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Martin Senger (firstname.lastname@example.org)
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
This software is provided "as is" without warranty of any kind.
This is actually the main documentation...
If you try to call any of these methods directly on this
Bio::Factory::AnalysisI object you will get a not implemented error message. You need to call them on a
Bio::Tools::Run::AnalysisFactory object instead.
Usage : $factory->available_categories; Returns : an array reference with the names of available categories Args : none
The analysis tools may be grouped into categories by their functional similarity, or by the similar data types they deal with. This method shows all available such categories.
Usage : $factory->available_analyses; $factory->available_analyses ($category); Returns : an array reference with the names of all available analyses, or the analyses available in the given '$category' Args : none || category_name
Show available analyses. Their names usually consist of category analysis names, separated by
Usage : $factory->create_analysis ($name); Returns : a Bio::Tools::Run::Analyis object Args : analysis name
A real factory method creating an analysis object. The created object gets all access and location information from the factory object.