Christopher Fields > BioPerl > Bio::SeqIO::MultiFile

Download:
BioPerl-1.6.924.tar.gz

Dependencies

Annotate this POD

CPAN RT

New  11
Open  4
View/Report Bugs
Module Version: 1.006924   Source  

NAME ^

Bio::SeqIO::MultiFile - Treating a set of files as a single input stream

SYNOPSIS ^

   my $seqin = Bio::SeqIO::MultiFile->new( -format => 'Fasta',
                                           -files  => ['file1','file2'] );
   while (my $seq = $seqin->next_seq) {
       # do something with $seq
   }

DESCRIPTION ^

Bio::SeqIO::MultiFile provides a simple way of bundling a whole set of identically formatted sequence input files as a single stream. File format is automatically determined by Bio::SeqIO.

FEEDBACK ^

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Ewan Birney ^

Email birney@ebi.ac.uk

APPENDIX ^

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_seq

 Title   : next_seq
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

next_primary_seq

 Title   : next_primary_seq
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

_load_file

 Title   : _load_file
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

_set_file

 Title   : _set_file
 Usage   :
 Function:
 Example :
 Returns :
 Args    :

_current_seqio

 Title   : _current_seqio
 Usage   : $obj->_current_seqio($newval)
 Function:
 Example :
 Returns : value of _current_seqio
 Args    : newvalue (optional)
syntax highlighting: