Bio::Variation::IO::xml - XML sequence variation input/output stream
Do not use this module directly. Use it via the Bio::Variation::IO class.
This object can transform Bio::Variation::SeqDiff objects to and from XML file databases.
The XML format, although consistent, is still evolving. The current DTD for it is at http://www.ebi.ac.uk/mutations/DTDE/seqDiff.dtd.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing lists Your participation is much appreciated.
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rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next Usage : $haplo = $stream->next() Function: returns the next seqDiff in the stream Returns : Bio::Variation::SeqDiff object Args : NONE
Title : write Usage : $stream->write(@haplos) Function: writes the $seqDiff objects into the stream Returns : 1 for success and 0 for error Args : Bio::Variation::SeqDiff object