Christopher Fields > BioPerl > bp_tree2pag

Download:
BioPerl-1.6.924.tar.gz

Annotate this POD

CPAN RT

New  12
Open  4
View/Report Bugs
Source  

NAME ^

bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS ^

 bp_tree2pag -if nexus -i file.nexus > file.pag

 # OR pipe in through STDIN, and use newick format instead

 cat file.newick | bp_tree2pag -if newick > file.nh

 # OR specify an output and input

 bp_tree2pag -o file.pag -i file.newick

DESCRIPTION ^

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.

syntax highlighting: