Gene Selkov, Jr. > Finnigan

Finnigan

This Release Finnigan-0.0206d  [Download] [Browse 11 May 2012
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License The Perl 5 License (Artistic 1 & GPL 1)
Special Files
Changes
Makefile.PL
MANIFEST
META.yml
README

Modules

Finnigan Thermo/Finnigan mass spec data decoder     0.0206
Finnigan::AuditTag a decoder for AuditTag, a substructure found in the Finnigan file headers     0.0206
Finnigan::CASInfo a decoder for autosampler data     0.0206
Finnigan::CASInfoPreamble a decoder for CASInfoPreamble, a numeric autosampler descriptor     0.0206
Finnigan::Decoder a generic binary structure decoder     0.0206
Finnigan::Error a decoder for Error, an error log record     0.0206
Finnigan::FileHeader a decoder for Finnigan file headers     0.0206
Finnigan::FractionCollector a decoder for FractionCollector, a mass range object in ScanEvent     0.0206
Finnigan::GenericDataDescriptor a decoder for GenericDataDescriptor, a key to decoding GenericRecord fields     0.0206
Finnigan::GenericDataHeader a decoder for GenericDataHeader -- a key to decoding generic data records     0.0206
Finnigan::GenericRecord a decoder for data structures defined by GenericDataHeader     0.0206
Finnigan::InjectionData a decoder for the injection parameters in a sequence table row     0.0206
Finnigan::InstID a decoder for InstID, a set of instrument identifiers     0.0206
Finnigan::InstrumentLogRecord a decoder for a single Instrument Log record     0.0206
Finnigan::MethodFile a decoder for the outer MethodFile container     0.0206
Finnigan::OLE2DIF a decoder for Double-Indirect FAT, a block allocation structure in Microsoft OLE2     0.0206
Finnigan::OLE2DirectoryEntry a decoder for the Microsoft OLE2 directory entry     0.0206
Finnigan::OLE2FAT a decoder for FAT Sector, a block allocation structure in OLE2     0.0206
Finnigan::OLE2File a decoder for Microsoft structured data files (OLE2 a.k.a. CDF)     0.0206
Finnigan::OLE2Header a decoder for the Microsoft OLE2 header structure     0.0206
Finnigan::OLE2Property a decoder for the Property structure in Microsoft OLE2     0.0206
Finnigan::PacketHeader a decoder for PacketHeader, a substructure of ScanDataPaket     0.0206
Finnigan::Peak a full-featured decoder for a single (M/z, abundance) pair, an element of the PeakList structure     0.0206
Finnigan::Peaks a decoder for PeaksList, the list of peak centroids     0.0206
Finnigan::Profile a full-featured decoder for Finnigan scan profiles     0.0206
Finnigan::ProfileChunk a full-featured decoder for a single ProfileChunk structure     0.0206
Finnigan::RawFileInfo a decoder for RawFileInfo, the primary index structure     0.0206
Finnigan::RawFileInfoPreamble a decoder for RawFileInfoPreamble, the binary data part of RawFileInfo     0.0206
Finnigan::Reaction a decoder for Reaction, the container for precursor mass and fragmentation energy     0.0206
Finnigan::RunHeader a decoder for RunHeader, the primary file index structure     0.0206
Finnigan::SampleInfo a decoder for SampleInfo, the primary file index structure     0.0206
Finnigan::Scan a lightweight scan data decoder     0.0206
Finnigan::ScanEvent a decoder for ScanEvent, a detailed scan descriptor     0.0206
Finnigan::ScanEventPreamble a decoder for ScanEventPreamble, the byte array component of ScanEvent     0.0206
Finnigan::ScanEventTemplate a decoder for ScanEventTemplate, the prototype scan descriptor     0.0206
Finnigan::ScanIndexEntry a decoder for ScanIndexEntry, a linked list element pointing to scan data     0.0206
Finnigan::ScanParameters a decoder for ScanParameters, a GenericRecord containing various scan meta-data.     0.0206
Finnigan::SeqRow a decoder for one row of the sequencer table     0.0206

Documentation

mzxml-unpack decode the base64-encoded scan data in an mzXML or mzML file  
uf-casinfo decode the CASInfo structure in a Finnigan raw file  
uf-error print the error log entries from a Finnigan raw file  
uf-header decode the file header in a Finnigan raw file  
uf-index examine the ScanIndexEntry structures in a Finnigan raw file  
uf-instrument print or dump the instrument IDs found a Finnigan raw file  
uf-log list or dump the instrument log entries in a Finnigan raw file  
uf-meth decode the embedded method file in a Finnigan raw file  
uf-mzml convert a Finnigan raw file to mzML  
uf-mzxml convert a Finnigan raw file to mzXML  
uf-params list or dump the ScanParameters records in a Finnigan raw file  
uf-rfi decode the RawFileInfo structure in a Finnigan raw file  
uf-runheader decode the RunHeader structure in a Finnigan raw file  
uf-scan examine scan data in a single MS scan  
uf-scan-light list the profile or centroids in a single MS scan  
uf-segments dump the scan event hirerarchy of a Finnigan raw file  
uf-seqrow decode the SeqRow structure in a Finnigan raw file  
uf-trailer examine the ScanEvent structures in a Finnigan raw file "trailer"  
uf-tune list or dump the instrument settings and calibration data from a Finnigan raw file