Genome - pipelines, tools, and data managment for genomics
use Genome; # modules in the Genome namespace will now dynamically load @i = Genome::InstrumentData::Illumina->get(...); $m = Genome::Model::SomaticVariation->create(...);
This is the base namespace module for the Genome software tree.
That tree has several primary components:
Genome::Model: a data modeling pipeline management system for genomics Genome::Model::Tools a tree of >1000 tools and tool wrappers for genomics Genome::* a variety of sample tracking classes with an RDBMS back-end
Only the tools system is currently released.
See genome for a complete inventory of all tool packages, and for command-line access to those tools.
This software is developed by the analysis and engineering teams at The Genome Center at Washington Univiersity in St. Louis, with funding from the National Human Genome Research Institute. Richard K. Wilson, P.I. Scott Abbott Travis Abbott Edward Belter Paul Bender Anthony Brummett Todd C. Carter Matthew Callaway C.J. Carey Lynn Carmichael Ken Chen Lei Chen Eric Clark Kevin Crouse Indraniel Das Nathan Dees Eric deMello Brian Derickson Alice Diec David Dooling Feiyu Du Adam Dukes James Eldred Xian Fan Ian Ferguson Chris Harris Amy Hawkins Todd Hepler Xin Hong Shunfang Hou Jasreet Hundal Erik Hvatum Mark Johnson Krisha-Latha Kanchi Cyriac Kandoth Phil Kimmey Michael Kiwala Daniel Koboldt Karthik Kota Kim Kyung David Larson Sai Lek Shawn Leonard Shin Leong Ling Lin Justin Lolofie Robert Long Charles Lu John Martin Josh McMichael Rick Meyer Thomas Mooney William Nash Nathan Nutter Ben Oberkfell John Osborne Josh Peck Jerome Peirick Craig Pohl Ryan Richt Noorus Sahar Abubucker Gabriel Sanderson William Schierding Jon Schindler William Schroeder Christopher Schuster Xiaoqi Shi Scott Smith Sasi Suruliraj Kenneth Swanson Jason Walker John Wallis Jim Weible Mike Wendl Todd Wylie
Copyright (C) 2007-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in this distribution.
For defects with any software in the genome namespace, contact genome-dev ~at~ genome.wustl.edu.