Edward Kawas > MOBY > MOBY

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NAME ^

MOBY - API for hosting and/or communicating with a MOBY Central registry

DESCRIPTION ^

This module serves 2 purposes:

Package Installation

Installation of this perl package is straightforward!

On *nix machines, install as follows:

On Window machines, substitute nmake for make!

Important if you are upgrading to newer versions, please make sure to remove any files that may be cached by this module! To help you do this, run the script moby-s-caching.pl. For information on using moby-s-caching.pl, use the -h option!

Important II make sure to run moby-s-update-db with the -h option to see if you need to updgrade the db schemas.

Installing A Custom MOBY-Central Registry

Assuming that you have already installed this package, the very first thing that you should do is run the script moby-s-install.pl.

This script will do the following:

BioMOBY Client Installation

Once the module has been installed using the command make install, there is nothing further left for you to do. You are free to start using the BioMOBY API.

BioMOBY Server Installation

To set up your own custom registry, you have to ensure that a few things are ready before hand!

Once you are sure that you satisfy the above items, go ahead and run the moby-s-install.pl script, by typing moby-s-install.pl at the command line. This file was installed onto your machine when you did your 'make install'!

What Exactly does moby-s-install.pl do?

Like we said before, the install script helps you install/configure your custom MOBY-Central registry.

First of all, the script ensure that you have all of the proper libraries installed.

The very next thing that the script does is prompt you for some information:

Once that information is entered, the script prompts you to set up apache.

Apache setup

The following is done when the installation script sets up apache:

FAQ

When I run the install script, IO::Prompt complains ...

This could mean that the package IO::Prompt is not installed properly.

What version do you have?

perl -MIO::Prompt -e'print "$IO::Prompt::VERSION\n";'

We have tested version 0.99.2 on both *nix machines and windows. Please make sure that you have that version. If you do not, please remove the one that you have (the cpan module CPAN Plus is very useful here) and install version 0.99.2! Version 0.99.4 doesn't seem to work too well and produces numerous warnings in our module. Other versions have yet to be tested.

How can I make the service tester run every hour?

First of all, the service tester only works on *NIX machines and will not work on Windows. The reason is due to a the module IPC::Shareable which doesn't port to windows.

To set up the service tester simply create a cron job. The following is an illustration of how to do this!

This will set up a cron job to run every start of the hour!

How do I set up the RDF Agent?

Detailed instructions for building, installing and configuring the agent can be found at http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/ConfigureRDFAgent.html

Missing Features

Acknowledgement

EXPORT

None by default.

SEE ALSO ^

For the most up-to-date documentation, visit the BioMOBY website at http://biomoby.org!

If you have questions or comments, please feel free to message us on the following mailing lists:

MOBY discussion list http://www.biomoby.org/mailman/listinfo/moby-l
MOBY Developers List http://www.biomoby.org/mailman/listinfo/moby-dev
MOBY bugs discussion list http://www.biomoby.org/mailman/listinfo/moby-bugs

AUTHORS ^

COPYRIGHT ^

Copyright (c) 2007 The Biomoby Consortium.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

This software is provided "as is" without warranty of any kind.

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