Gavin Sherlock > Microarray-GeneXplorer > Microarray::DatasetImageMaker

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Microarray-GeneXplorer-0.11.tar.gz

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Module Version: 0.1   Source  

Name ^

Microarray::DatasetImageMaker - Creates an image from a microarray dataset

Abstract ^

Microarray::DatasetImageMaker is a class that accepts a Microarray::Dataset object and produces the images based on the meta data contained in the dataset object. It is meant to separate the image production code into something a little more manageable.

Usage ^

  $imageMaker = Microarray::DatasetImageMaker(dataset=>$dataSetObj);

where $dataset is an CdtDataset object class or another concrete Dataset class.

Future Plans ^

This class should definitely be augmented to make images based on the various tree files

Instance Constructor ^

new

my $imageMaker = Microarray::DatasetImageMaker->new();

Instance Methods ^

imageType

returns the suffix for the image type being used for a newly constructed dataset

makeImage

This method actually results in an image being made.

Usage:

    $imageMaker->makeImage('dataset' => $self,
                           'type'    => 'matrix');
    $imageMaker->makeImage('dataset' => $self,
                           'type'    => 'header'); 

Protected Methods ^

_dataset

returns the dataset object used to initialize the imageMaker, if any

_contrast

returns contrast used initialize the imageMaker, either belonging to the dataset or other optional argument

_name

returns file base name of the dataset used initialize the imageMaker, either belonging to the dataset or other optional argument

_imagePath

returns image outpath of the dataset used initialize the imageMaker, either belonging to the dataset or other optional argument

_dataPath

returns data outpath of the dataset used initialize the imageMaker, either belonging to the dataset or other optional argument

_height

returns height of the dataset used initialize the imageMaker, either belonging to the dataset or other optional argument

_width

returns width used initialize the imageMaker, either belonging to the dataset or other optional argument

_colorscheme

returns colorscheme used initialize the imageMaker, either belonging to the dataset or other optional argument

Authors ^

John C. Matese jcmatese@genome.stanford.edu

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