Erick Antezana > ONTO-PERL > OBO::APO::NCBIToRDF

Download:
ONTO-PERL/ONTO-PERL-1.42.tar.gz

Dependencies

Annotate this POD

CPAN RT

New  1
Open  0
View/Report Bugs
Source  

NAME ^

OBO::APO::NCBIToRDF - A NCBI taxonomy dump to RDF converter.

DESCRIPTION ^

Converts NCBI taxonomy dump files (names and nodes) to a RDF graph.

NCBI taxonomy dump files files can be obtained from ftp://ftp.ncbi.nih.gov/pub/taxonomy/

The method 'work' gets the nodes file, the names file, and file handler for the RDF graph.

AUTHOR ^

Mikel Egana Aranguren mikel.egana.aranguren@gmail.com

COPYRIGHT AND LICENSE ^

Copyright (C) 2008 by Mikel Egana Aranguren

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.

work

  Usage    - $NCBIToRDF->work($NCBINodesFilePath,$NCBINamesFilePath,$RDF_file_handler)
  Returns  - RDF file handler
  Args     - The paths to the NCBI nodes and names files and a file handler for the new RDF file
  Function - Converts NCBI nodes and NCBI names to an RDF graph.

char_hex_http

  Usage    - $ontology->char_hex_http($seq)
  Returns  - the sequence with the hexadecimal representation for the http special characters
  Args     - the sequence of characters
  Function - Transforms a http character to its equivalent one in hexadecimal. E.g. : -> %3A
syntax highlighting: