OBO::APO::SwissProtToRDF - A SwissProt to RDF converter.
Converts SwissProt files to a RDF graph.
NCBI taxonomy dump files files can be obtained from:
ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/taxonomic_divisions
e.g. uniprot_sprot_human.dat.gz
and/or
ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.dat.gz
Erick Antezana, <erick.antezana -@- gmail.com>
Copyright (c) 2006-2015 by Erick Antezana. All rights reserved.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.
Usage - $SwissProtToRDF->work($uniprot_file) Returns - RDF file handler Args - The paths to the SwissProt file and a file handler for the new RDF file Function - Converts SwissProt entries from a file to an RDF graph.
Usage - $ontology->char_hex_http($seq) Returns - the sequence with the hexadecimal representation for the http special characters Args - the sequence of characters Function - Transforms a http character to its equivalent one in hexadecimal. E.g. : -> %3A
To install OBO::Util::Set, copy and paste the appropriate command in to your terminal.
cpanm
cpanm OBO::Util::Set
CPAN shell
perl -MCPAN -e shell install OBO::Util::Set
For more information on module installation, please visit the detailed CPAN module installation guide.