Erick Antezana > ONTO-PERL > OBO::Parser::OWLParser

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ONTO-PERL/ONTO-PERL-1.41.tar.gz

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work

  Usage    - $OWLParser->work($owl_file_path)
  Returns  - the parsed OWL ontology
  Args     - the OWL file to be parsed
  Function - parses an OWL file (oboInOwl mapping)

owl_id2obo_id

  Usage    - $obj->owl_id2obo_id($term)
  Returns  - the ID for OBO representation.
  Args     - the OWL-type ID.
  Function - Transform an OWL-type ID into an OBO-type one. E.g. APO_I1234567 -> APO:I1234567

char_hex_http

  Usage    - $obj->char_hex_http($seq)
  Returns  - the sequence with the hexadecimal representation for the http special characters
  Args     - the sequence of characters
  Function - Transforms a http character to its equivalent one in hexadecimal. E.g. : -> %3A

NAME ^

OBO::Parser::OWLParser - An OWL parser (oboInOwl mapping).

SYNOPSIS ^

use OBO::Parser::OWLParser;

use strict;

my $my_parser = OBO::Parser::OWLParser->new;

my $ontology = $my_parser->work("apo.owl");

DESCRIPTION ^

An OWLParser object works on parsing an OWL file which is compliant with the OBO to OWL mapping described here:

http://www.bioontology.org/wiki/index.php/OboInOwl:Main_Page

AUTHOR ^

Erick Antezana, <erick.antezana -@- gmail.com>

COPYRIGHT AND LICENSE ^

Copyright (c) 2006-2013 by Erick Antezana

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.

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