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Luis M Rodríguez-R > Polloc-v1.5.3 > Bio::Polloc::Rule::crispr

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Module Version: 1.0503   Source   Latest Release: Polloc-1.5.3b

NAME ^

Bio::Polloc::Rule::crispr - A rule of type CRISPR

DESCRIPTION ^

Runs CRISPRFinder v3 to search CRISPRs

AUTHOR - Luis M. Rodriguez-R ^

Email lmrodriguezr at gmail dot com

APPENDIX ^

Methods provided by the package

new

execute

stringify_value

value

Arguments

Value (str or hashref or arrayref). The supported keys are:

-ignoreprobable

Should I ignore the ProbableCrispr results?

Returns

Value (hashref or undef).

INTERNAL METHODS ^

Methods intended to be used only within the scope of Bio::Polloc::*

_parameters

_executable

Attempts to find the CRISPRfinder script.

_qualify_value

Implements the _qualify_value() from the Bio::Polloc::RuleI interface

Return

Value (ref-to-hash or undef)

_initialize

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