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Luis M Rodríguez-R > Polloc-v1.5.3 > Bio::Polloc::Rule::pattern

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Module Version: 1.0503   Source   Latest Release: Polloc-1.5.3b

NAME ^

Bio::Polloc::Rule::pattern - A rule determined by a pattern

AUTHOR - Luis M. Rodriguez-R ^

Email lmrodriguezr at gmail dot com

IMPLEMENTS OR EXTENDS ^

PUBLIC METHODS ^

Methods provided by the package

new

The basic initialization method

execute

Executes the search and returns the loci.

Arguments

The sequence (-seq) as a Bio::Seq or a Bio::SeqIO object.

Returns

An array reference populated with Bio::Polloc::Locus::pattern objects.

stringify_value

Produces a string with the value of the rule.

value

Arguments

A str, hashref or arrayref. The supported keys are:

-pattern str

The pattern to be identified. For example: TAT[TA]AC.

Return

Value (hashref or undef).

INTERNAL METHODS ^

Methods intended to be used only within the scope of Bio::Polloc::*

_parameters

_executable

Gets the executable of fuzznuc.

_initialize

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