Bio::Polloc::Locus::extend - A feature based on another one
A feature of a sequence, inferred by similarity or surrounding regions similar to those of a known feature. Implements Bio::Polloc::LocusI.
Email lmrodriguezr at gmail dot com
Methods provided by the package
Creates a Bio::Polloc::Locus::repeat object.
The reference feature or part of the reference collection.
The score of extension (bit-score on BLAST or score on HMMer, for example).
Gets/sets the reference feature of the extension. Be careful, this can also refer to one feature in a collection of reference. Avoid using specific data from this feature.
The reference feature (Bio::Polloc::LocusI object, optional).
The reference feature (Bio::Polloc::LocusI object or undef).
Gets/sets the score.
The score (float, optional).
The score (float or undef).
Tries to calculate the distance using the base-feature's distance() method. See Bio::Polloc::LocusI-distance()>.
distance()
Bio::Polloc::Polloc::Error.
Methods intended to be used only within the scope of Bio::Polloc::*
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.