Bio::Polloc::LocusIO::gff3 - A LocusIO for Gff3
A repeatitive locus.
Bio::Polloc::LocusIO
Email lmrodriguezr at gmail dot com
Methods provided by the package
Creates a Bio::Polloc::LocusIO::gff3 object.
A Bio::Polloc::LocusIO::gff3 object.
Formats the locus as a GFF3 line and returns it.
Boolean (1 or 0)
The GFF3-formatted line (str) =head3 Note
This function stores the line in cache. If it is called twice, the second time will return the cached line unless the -force=1> flag is passed.
-force=
Methods intended to be used only within the scope of Bio::Polloc::*
Properly escapes an attribute for GFF3 (an attribute the value of one of the colon-separated entries in the ninth column)
To simplify the code of Bio::Polloc::LocusI::gff3_line
The value to escape
The escaped value
Properly escapes a value on the GFF3 line. I.e., the content of one column. Not to be used with the ninth column, because scapes the colon. the comma and the equals signs. Use instead the _gff3_attribute function attribute by attribute
To simplify the code of gff3_line
Decodes the URI-fashioned values on GFF3
The value to decode (str)
The decoded value (str)
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.