Ryan C. Thompson > Term-DNAColor > Term::DNAColor

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Module Version: 0.110460   Source  

NAME ^

Term::DNAColor - Add colors to DNA and RNA sequences in terminal output

VERSION ^

version 0.110460

SYNOPSIS ^

    use Term::DNAColor;

    print colordna("ATCGGTCNNNTAGCTGAN"), "\n";

DESCRIPTION ^

This module provides a function, colordna, that takes a DNA sequence and wraps unambiguous nucleotides in ANSI color codes, so that you can print the sequence to a terminal and have it come out colored.

FUNCTIONS ^

colordna

Takes a string representing a DNA sequence and adds ANSI color codes to the following nucleotides:

U is colorized like T, to accomodate RNA sequences.

In addition, the entire sequence is rendered in bold.

This function is exported by default.

colorrna

This is simply an alias for colordna. Both colordna and colorrna will highlight U for uracil. Unlike colordna, it is not exported by default, but only by request.

BUGS AND LIMITATIONS ^

Colors are not configurable.

Please report any bugs or feature requests to rct+perlbug@thompsonclan.org.

SEE ALSO ^

INSTALLATION ^

See perlmodinstall for information and options on installing Perl modules.

AUTHOR ^

Ryan C. Thompson <rct@thompsonclan.org>

COPYRIGHT AND LICENSE ^

This software is copyright (c) 2011 by Ryan C. Thompson.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

DISCLAIMER OF WARRANTY ^

BECAUSE THIS SOFTWARE IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE SOFTWARE, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE SOFTWARE IS WITH YOU. SHOULD THE SOFTWARE PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR, OR CORRECTION.

IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE SOFTWARE AS PERMITTED BY THE ABOVE LICENCE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE SOFTWARE (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE SOFTWARE TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.

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