Text::Tradition::StemmaUtil - standalone utilities for distance tree calculations
This package contains a set of utilities for running phylogenetic analysis on text collations.
Returns a character matrix string suitable for Phylip programs, which corresponds to the given alignment table. See Text::Tradition::Collation for a description of the alignment table format. Options include:
Runs Phylip Pars on the given character matrix. Returns results in Newick format.
Parses the given Newick tree(s) into one or more Stemma objects with undirected graphs.
Uses the FigTree utility (if installed) to transform the given Newick tree(s) into a graph visualization.
This package is free software and is provided "as is" without express or implied warranty. You can redistribute it and/or modify it under the same terms as Perl itself.
Tara L Andrews <email@example.com>