Text::Tradition::StemmaUtil - standalone utilities for stemma graph display and distance tree calculations
This package contains a set of utilities for displaying arbitrary stemmata and running phylogenetic analysis on text collations.
Parses the graph specification on the filehandle in $dotstr and returns a Graph object. This subroutine works around some deficiencies in Graph::Reader::Dot.
Returns a dot specification intended for display, according to the logical attributes of the witnesses.
Returns a dot specification of a stemma graph with logical witness features, intended for editing the stemma definition.
Returns a character matrix string suitable for Phylip programs, which corresponds to the given alignment table. See Text::Tradition::Collation for a description of the alignment table format. Options include:
Runs Phylip Pars on the given character matrix. Returns results in Newick format.
Parses the given Newick tree(s) into one or more Stemma objects with undirected graphs.
Uses the FigTree utility (if installed) to transform the given Newick tree(s) into a graph visualization.
This package is free software and is provided "as is" without express or implied warranty. You can redistribute it and/or modify it under the same terms as Perl itself.
Tara L Andrews <email@example.com>