Bridget McInnes > UMLS-Similarity

UMLS-Similarity

This Release UMLS-Similarity-1.35  [Download] [Browse 10 Feb 2014
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Special Files
CHANGELOG
INSTALL
Makefile.PL
MANIFEST
META.json
README
TODO

Modules

UMLS::Similarity A suite of Perl modules that implement a number of semantic similarity measures in order to calculate the similarity between two concepts in the UMLS. The measures use the UMLS-Interface module to acc    1.35
UMLS::Similarity::ErrorHandler Provides the error handling of the configuration files for the measures in the UMLS-Similarity package.      
UMLS::Similarity::cdist Perl module for computing semantic relatedness of concepts in the UMLS by simple edge counting proposed by Rada, et. al. (1989).     0.07
UMLS::Similarity::closeness     0.07
UMLS::Similarity::jcn Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Jiang and Conrath (1997).     0.09
UMLS::Similarity::lch Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Leacock and Chodorow (1998).     0.07
UMLS::Similarity::lesk Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Banerjee and Pedersen (2002).     0.07
UMLS::Similarity::lin Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Lin (1997).     0.07
UMLS::Similarity::nam Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Nguyen and Al-Mubaid (2006)     0.07
UMLS::Similarity::path Perl module for computing semantic similarity of concepts in the UMLS by simple edge counting.     0.07
UMLS::Similarity::random Perl module for computing a random baseline by assigning a random number between zero and one as the similarity score.     0.05
UMLS::Similarity::res Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Resnik (1995).     0.07
UMLS::Similarity::vector Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Patwardhan and Pedersen (2006).     0.11
UMLS::Similarity::wup Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Wu and Palmer (1994).     0.07
UMLS::Similarity::zhong Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Zhong, et al 2002.     0.07

Documentation

create-icfrequency.pl This program sums the frequency counts of the CUIs from a specified set of sources in plain text.  
create-icpropagation.pl This program determines the probability of the CUIs in a specified set of sources and relations.  
query-umls-similarity-webinterface.pl This program returns a semantic similarity score between two concepts.  
sim2r.pl This program converts a series of umls-similarity output to R format in order to run the SignificanceTesting.r program.  
spearmans.pl This program calculates Spearman's Rank Correlation between two datasets.  
umls-similarity.pl This program returns a semantic similarity score between two concepts.  
umls_similarity.cgi a CGI script implementing a portion of a web interface for UMLS::Similarity  
umls_similarity_server.pl [Web] The backend UMLS::Similarity server for the Web Interface  
vector-input.pl This program builds the term index file and co-occrrence matrix for umls-similarity.pl to calculate the vector relatedness.  
wps.cgi a CGI script implementing the obtaining of the concept definitions for the web interface.  

Other Files

samples/README
web/README
web/docs/faq.html
web/docs/index.html
web/docs/instructions.html
web/docs/relatedness_measures.html
web/docs/similarity_measures.html
web/index.html