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Source   Latest Release: UMLS-Similarity-1.49

NAME ^ - This program converts a series of umls-similarity output to R format in order to run the SignificanceTesting.r program.


This program converts output generated by to R format in order to run the SignificanceTesting.r program


Usage: GOLD_FILE [FILE1 FILE2 ...]




This is the gold standard. Usually this is the data that has manually been score by human annotaters. This is what the SignificanceTesting.r program is going to use to determine the correlation against for the other files.

The format of this file is the same as output format of the program.

score<>cui1<>cui2 score<>term1<>term2 ...


These are the output files generated by the program. The header information in R will be the name of the file.



The format of hte input files contains words rather than CUIs or is not a output file.


Displays the quick summary of program options.


Displays the version information.


A cvs file that can be read by the SignificanceTesting.r program



  If you have any trouble installing and using UMLS-Similarity, 
  please contact us via the users mailing list :
  You can join this group by going to:
  You may also contact us directly if you prefer :
      Bridget T. McInnes: bthomson at 

      Ted Pedersen : tpederse at


 Bridget T. McInnes, University of Minnesota


Copyright (c) 2007-2011,

 Bridget T. McInnes, University of Minnesota
 bthomson at
 Ted Pedersen, University of Minnesota Duluth
 tpederse at

 Siddharth Patwardhan, University of Utah, Salt Lake City
 Serguei Pakhomov, University of Minnesota Twin Cities

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to:

 The Free Software Foundation, Inc.,
 59 Temple Place - Suite 330,
 Boston, MA  02111-1307, USA.
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