sim2r.pl - This program converts a series of umls-similarity output to R format in order to run the SignificanceTesting.r program.
This program converts output generated by umls-similarity.pl to R format in order to run the SignificanceTesting.r program
Usage: sim2r.pl GOLD_FILE [FILE1 FILE2 ...]
This is the gold standard. Usually this is the data that has manually been score by human annotaters. This is what the SignificanceTesting.r program is going to use to determine the correlation against for the other files.
The format of this file is the same as output format of the umls-similarity.pl program.
score<>cui1<>cui2 score<>term1<>term2 ...
These are the output files generated by the umls-similarity.pl program. The header information in R will be the name of the file.
The format of hte input files contains words rather than CUIs or is not a umls-simmilarity.pl output file.
Displays the quick summary of program options.
Displays the version information.
A cvs file that can be read by the SignificanceTesting.r program
If you have any trouble installing and using UMLS-Similarity, please contact us via the users mailing list : firstname.lastname@example.org You can join this group by going to: http://tech.groups.yahoo.com/group/umls-similarity/ You may also contact us directly if you prefer : Bridget T. McInnes: bthomson at cs.umn.edu Ted Pedersen : tpederse at d.umn.edu
Bridget T. McInnes, University of Minnesota
Copyright (c) 2007-2011,
Bridget T. McInnes, University of Minnesota bthomson at cs.umn.edu Ted Pedersen, University of Minnesota Duluth tpederse at d.umn.edu Siddharth Patwardhan, University of Utah, Salt Lake City email@example.com Serguei Pakhomov, University of Minnesota Twin Cities firstname.lastname@example.org
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to:
The Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.