InterMine > Webservice-InterMine-Bio > Webservice::InterMine::Bio

Download:
Webservice-InterMine-Bio-0.9900.tar.gz

Dependencies

Annotate this POD

CPAN RT

Open  0
View/Report Bugs
Module Version: 0.9900   Source  

NAME ^

Webservice::InterMine::Bio - Access data from InterMine queries in biological formats.

VERSION ^

Version 0.9802

SYNOPSIS ^

This module provides roles that can be used to access data in standard biological formats, and even interface directly with BioPerl classes.

    use Webservice::InterMine::Bio qw/GFF3/;
    use Webservice::InterMine 'flymine';

    my $query = Webservice::InterMine->new_query(with => GFF3);
    $query->add_sequence_features("Gene", "Gene.exons", "Gene.transcripts");
    my $feature_store = $query->get_feature_store(); # Get a Bio::DB::SeqFeature::Store
    ...

EXPORT ^

This module exports (optionally) constants that simplify references to the roles in this package, by providing means to name these roles in the manner expected by new_query. So:

AUTHOR ^

Alex Kalderimis, <dev at intermine.org>

BUGS ^

Please report any bugs or feature requests to bug-webservice-intermine-bio at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Webservice-InterMine-Bio. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.

SUPPORT ^

You can find documentation for this module with the perldoc command.

    perldoc Webservice::InterMine::Bio

You can also look for information at:

ACKNOWLEDGEMENTS ^

The funding bodies that support InterMine:

LICENSE AND COPYRIGHT ^

Copyright 2011 Alex Kalderimis.

This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.

See http://dev.perl.org/licenses/ for more information.

syntax highlighting: