Bio::Annotation::Target - Provides an object which represents a target (ie, a similarity hit) from one object to something in another database
$target1 = new Bio::Annotation::Target(-target_id => 'F321966.1',
-start => 1,
-end => 200,
-strand => 1, # or -1
);
# or
$target2 = new Bio::Annotation::Target();
$target2->target_id('Q75IM5');
$target2->start(7);
# ... etc ...
# Target is-a Bio::AnnotationI object, can be added to annotation
# collections, e.g. the one on features or seqs
$feat->annotation->add_Annotation('Target', $target2);
Provides an object which represents a target (ie, a similarity hit) from one object to something in another database without prescribing what is in the other database
Scott Cain - cain@cshl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : as_text Usage : Function: Example : Returns : Args :
Title : tagname
Usage : $obj->tagname($newval)
Function: Get/set the tagname for this annotation value.
Setting this is optional. If set, it obviates the need to
provide a tag to Bio::AnnotationCollectionI when adding
this object. When obtaining an AnnotationI object from the
collection, the collection will set the value to the tag
under which it was stored unless the object has a tag
stored already.
Example :
Returns : value of tagname (a scalar)
Args : new value (a scalar, optional)
$obj->target_id() #get existing value $obj->target_id($newval) #set new value
value of target_id (a scalar)
new value of target_id (to set)
